get_data_for_country — get_data_for

Gets the data of a particular type for a country

get_data_for_country(
 
    list_of_countries_sheet_url = "https://docs.google.com/spreadsheets/d/13QlFTCJJXlNUp52bn6eM3eFhH_cM1DMTFo-VNwB4Q4U",
  country_value,
  type_value,
  AMR_type = NULL,
  user_email = NULL,
  sleep = 5
)

Arguments

country_value	The name of the country
type_value	one of AMR <SPECIES>, Antimicrobial Susceptibility Testing, Combined Data, Epidemiological Metadata, HiSeq X10 Sequencing Metadata, MiSeq Sequencing Metadata, MLST, QC and Assembly Metadata.
AMR_type	If specifying a AMR sheet, then this should be either 'acquired'(default) or 'point'.
user_email	user email if sheet contains authentication. This may open a browser for authentication and access to Gdrive (optional)
sleep	number of seconds to sleep after call to prevent overload of Google APIs
sheet_list_url	The URL of a google sheet with the columns country and URL. Each URL points to a Google sheet containing URLs of spreadsheets containing the data of the type specified in type_value for the country specified in country_value

Value

A tibble dataframe representing the data in the Googlesheet for the type and country specified