get_country_urls — get_country

Gets the URLs for Googlesheets for a country

get_country_urls(
 
    list_of_countries_sheet_url = "https://docs.google.com/spreadsheets/d/13QlFTCJJXlNUp52bn6eM3eFhH_cM1DMTFo-VNwB4Q4U",
  user_email = NULL,
  country_value = NULL,
  exclude_url = FALSE
)

Arguments

list_of_countries_sheet_url	The URL of a google sheet with the columns type and URL. Each URL points to a Google sheet containing data of the type specified in type_value
user_email	user email if sheet contains authentication. This may open a browser for authentication and access to Gdrive (optional)
exclude_url	Boolean to determine whether to remove the url column
type_value	one of AMR <SPECIES>, Antimicrobial Susceptibility Testing, Combined Data, Epidemiological Metadata, HiSeq X10 Sequencing Metadata, MiSeq Sequencing Metadata, MLST, QC and Assembly Metadata.

Value

A tibble dataframe representing the data in the Googlesheet which has URLs for the GHRU data sets