colour_point_amr_data — colour_point_amr

Takes a dataframe with point AMR prediction data and converts it into columms for microreact colouring

colour_point_amr_data(
  point_amr_data,
  present_colour = "#ff6b6b",
  absent_colour = "#efefef"
)

Arguments

point_amr_data	A dataframe of point AMR data where there is a assembled column for each gene and then 0 or more mutations for each assembled gene - for each sample the latter will have a value of 'yes' or 'no'
absent_color	the html colour to use when a gene is absent
absence_characters	the character to use when a gene is absent

Value

A dataframe where for each mutation there will be 2 columns. One with the mutation name and a value of 'yes' or 'no' Another with the mutation name and the suffix '__colour'. This will be 'red' or 'lime' for 'yes' and 'no' respectively