annotate_amr_data — annotate_amr

convert amr dataframe to long format and join to NCBI metadata

annotate_amr_data(amr_data)

Arguments

amr_data	acquired_amr_data obtained using the ghruR::get_data_for_country(country_value = "<COUNTRY>", type_value = "AMR <SPECIES>", AMR_type = "acquired")

annonated_amr_data dataframe with amr data converted to long format and annotated with NCBI metadata