Last updated: 2022-04-26
Checks: 1 1
Knit directory: MS_lesions_snRNAseq/
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File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | 8f6077d | Macnair | 2022-04-06 | Update index file |
html | 8f6077d | Macnair | 2022-04-06 | Update index file |
Rmd | 9c3ce5a | Macnair | 2022-04-05 | Remove all unnecessary files |
Rmd | 74935aa | wmacnair | 2022-03-06 | Fix MOFA WM, update some plots |
html | 74935aa | wmacnair | 2022-03-06 | Fix MOFA WM, update some plots |
Rmd | d83826d | wmacnair | 2022-01-27 | Add pages summarizing DE results |
html | d83826d | wmacnair | 2022-01-27 | Add pages summarizing DE results |
Rmd | ceedfd1 | wmacnair | 2022-01-17 | Update index.html |
html | ceedfd1 | wmacnair | 2022-01-17 | Update index.html |
Rmd | 93fa77e | wmacnair | 2022-01-05 | Add superclean PAGA analysis |
html | 93fa77e | wmacnair | 2022-01-05 | Add superclean PAGA analysis |
Rmd | 1a38d84 | wmacnair | 2021-12-17 | Add initial version of file with all figures |
html | 1a38d84 | wmacnair | 2021-12-17 | Add initial version of file with all figures |
Rmd | ff2b8fb | wmacnair | 2021-12-15 | Update PAGA analysis, including colouring with ANCOM |
html | ff2b8fb | wmacnair | 2021-12-15 | Update PAGA analysis, including colouring with ANCOM |
Rmd | 6706e1e | wmacnair | 2021-12-13 | Update index to point to slim muscat results |
html | 6706e1e | wmacnair | 2021-12-13 | Update index to point to slim muscat results |
Rmd | 9af1539 | wmacnair | 2021-12-13 | Save GO terms associated with modules |
html | 9af1539 | wmacnair | 2021-12-13 | Save GO terms associated with modules |
Rmd | 9ee5eee | wmacnair | 2021-12-08 | Add oligo groupings to ms09_ancombc_mixed CLR plots |
html | 9ee5eee | wmacnair | 2021-12-08 | Add oligo groupings to ms09_ancombc_mixed CLR plots |
Rmd | aa64e51 | wmacnair | 2021-12-06 | Add comparison of abundances with Rowitch clusters |
html | aa64e51 | wmacnair | 2021-12-06 | Add comparison of abundances with Rowitch clusters |
Rmd | 38f3fd8 | wmacnair | 2021-11-26 | Update index with new figure slides link |
html | 38f3fd8 | wmacnair | 2021-11-26 | Update index with new figure slides link |
Rmd | c8c9222 | wmacnair | 2021-11-26 | Add fine type muscat links to index, update .gitignore |
html | c8c9222 | wmacnair | 2021-11-26 | Add fine type muscat links to index, update .gitignore |
Rmd | e94e407 | wmacnair | 2021-11-25 | Update index, also mofa code |
html | e94e407 | wmacnair | 2021-11-25 | Update index, also mofa code |
html | 7fb1b95 | wmacnair | 2021-11-25 | Host with GitLab. |
Rmd | afe32c6 | Macnair | 2021-11-16 | Final version of ANCOM-BC analysis |
Rmd | b9e43a8 | Macnair | 2021-10-23 | Update index |
Rmd | 8a15881 | Macnair | 2021-10-18 | Update index.Rmd with final MOFA results` |
Rmd | 1552617 | Macnair | 2021-10-05 | Save MOFA genes to xls |
Rmd | c1a0bff | Macnair | 2021-10-05 | Update GM MOFA with final metadata |
Rmd | c679b20 | Macnair | 2021-10-04 | Update index |
Rmd | 391aef9 | Macnair | 2021-10-04 | Update index.html with new mofa analysis |
Rmd | 9153b78 | Macnair | 2021-09-24 | Update index.Rmd |
Rmd | dc248fa | Macnair | 2021-09-03 | Update index.html with links |
Rmd | 96d385e | Macnair | 2021-08-24 | Update index.html, also a couple of minor tweaks |
Rmd | f60e5c1 | Macnair | 2021-08-03 | Add astrocyte layer genes to ms12_markers |
Rmd | 47b429a | Macnair | 2021-07-23 | Analyse ctrl GM vs WM, fine celltypes |
Rmd | 903c384 | Macnair | 2021-07-22 | Update MOFA analysis |
Rmd | 3a29e55 | Macnair | 2021-07-09 | Add MOFA patient analysis (WM only) |
Rmd | 1036875 | Macnair | 2021-07-02 | Add analysis of oligo-PCs via muscat |
Rmd | 0ec42e1 | Macnair | 2021-06-20 | Update GSEA analysis, heatmaps, lesion-specific |
Rmd | 856df8d | Macnair | 2021-06-15 | Update index with changes |
Rmd | 8ccd4e7 | Macnair | 2021-06-08 | Update muscat reports |
Rmd | 5ab29c3 | Macnair | 2021-06-03 | typo in index.html |
Rmd | bb0eebf | Macnair | 2021-06-03 | Updated index.html |
Rmd | cfacffb | Macnair | 2021-05-27 | Updated index.html |
Rmd | 7f4198b | Macnair | 2021-05-26 | Updated index file |
Rmd | d4b022a | Macnair | 2021-05-21 | Fix typo in index.Rmd |
Rmd | 58205c2 | Macnair | 2021-05-21 | Update with random effects and markers |
Rmd | eef8a1c | Macnair | 2021-04-29 | Minor tweaks to allow rerunning on Roche servers |
Rmd | a6221cc | wmacnair | 2021-04-07 | Giant update of recent work |
Rmd | d2a3b50 | wmacnair | 2021-02-10 | Added admin files |
Rmd | 31fc587 | wmacnair | 2021-01-19 | Initial commit of mainly blank repo |
The link marked “source code” in the header of the html files is wrong, annoyingly… As a quick fix, I’m putting the correct link here: https://gitlab.com/wmacnair/MS_lesions_snRNAseq
oNMF
PAGA
ANCOM-BC
MOFA+
- WMMOFA+
- GM w layer PCs